PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G135600.1
Common NameB456_007G135600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 347aa    MW: 38899.4 Da    PI: 4.9425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G135600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.5e-06220246531
                         HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                         + +++r+RR ri +++  L+ellP++s
  Gorai.007G135600.1 220 AAAIDRQRRLRIDESIKALQELLPSSS 246
                         5799*********************83 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.563215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9217273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-9217274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-5217269No hitNo description
SMARTSM003530.0058221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT  60
PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGASEI QRELLHSNEG KAFSSGPDGY  120
SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QLCVFQQNHA  180
SWMQKPKAED GNVSHLQSKE TISAPSFQSQ PLYHAPKSRA AAIDRQRRLR IDESIKALQE  240
LLPSSSERGL GNALDDIIDY VKFLQLQVKE LSRSRLGGEP TSNPFVFFEG YGHYVLHEQM  300
INEPLEEMMA KLLEINPSAA TQLLESRGLY MMPRALVDDF CTESHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5892025e-88JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490539.10.0PREDICTED: transcription factor bHLH69-like isoform X1
RefseqXP_012490540.10.0PREDICTED: transcription factor bHLH69-like isoform X1
TrEMBLA0A0D2SJI70.0A0A0D2SJI7_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.15e-21LJRHL1-like 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]